PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 448aa    MW: 49948.8 Da    PI: 9.8377
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687788PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-32178PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-08129174246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 
                      + WT+eE ++l d+++++  + ++ Ia ++     Rt +++k+r+++
        Lsa003257 129 LTWTKEETDQLFDLCERFDLR-FSVIADRFSssSSRTMEELKNRYYS 174
                      58*******************.***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162821.1E-31103179IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007171.0E-8127178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-6129177IPR009057Homeodomain-like
SuperFamilySSF466896.77E-6130181IPR009057Homeodomain-like
CDDcd116581.26E-18131175No hitNo description
PfamPF054995.5E-7324379IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDAKDILGIP KSSLPIPQEK KSRPQKDSQR KPDGISREVY ALTGGVAPLM PSIDANQLKK  60
RHQPENEKIT WEWLAFTNSA RKDNLQLYHW VRVVNGTPPT GDYSFAKYNK SVDVIKYTDE  120
EYEKHLTDLT WTKEETDQLF DLCERFDLRF SVIADRFSSS SSRTMEELKN RYYSVSRTIL  180
IARAPTPADV SSHPLVKEPY NISQEIERKR ALSMVLSQTK HQERKDAEVL SEAKKITESR  240
MAAKAAQDAE LPVTSNISPE GVEKTSAPAD TASPSSIQVA AGGGGGAPLM SMADNAAAAA  300
ASLRMLRVYL RTYALDQMVQ AASSSAGLRT IKRVEQFLQE LKVNLKPKVP TKAVCAEHLE  360
LRKEILTLLN LQKLLQNKEE GSYNETPDTP KRVMDLDRTF IPDPVVSFGE RVVKRDQKRK  420
GPGAGPGREA PSSPAQSKRP RKLKATDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iej_A4e-20102189493DNA methyltransferase 1-associated protein 1
3hm5_A4e-20102189493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412418VKRDQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051200.10.0Myb-like transcription factor family protein isoform 1
RefseqXP_007051201.10.0Myb-like transcription factor family protein isoform 1
RefseqXP_007051203.10.0Myb-like transcription factor family protein isoform 1
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A118K7N50.0A0A118K7N5_CYNCS; DNA methyltransferase 1-associated 1
STRINGVIT_07s0005g01910.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein